Apr 15, 2025 · In this paper, we propose PVGwfa, a multi-level parallel sequence-to-graph alignment algorithm. We first employ MPI and Pthread for multi-process and multi-thread …

quence data and the associated computational demand, parallel solutions to MSA are emerging. Some popular parallel system architectures and parallel MSA algorithms are presented along …

A fast and sensitive new sequence alignment and database search algorithm has been designed specifically to exploit the advantages of the SIMD technology. High sensitivity was achieved by …

Dec 23, 2011 · Progressive multiple sequence alignment algorithm is a heuristic alignment technique that builds up a final multiple sequence alignment by combining pair-wise …

In this work we present merAligner, a highly parallel sequence aligner that implements a seed–and–extend algorithm and employs paral-lelism in all of its components.

Jul 19, 2016 · This paper presents new approaches to high performance biological sequence database scanning with the Smith-Waterman algorithm and the first stage of progressive …

The Needleman-Wunsch algorithm is first implemented using CUDA to enable parallel execution of single sequence alignment on GPUs and extended to multiple sequence alignment using …

Aug 7, 2023 · In this article, we propose a parallel variation of the NW algorithm that enables scalable global sequence alignment with customizable scoring schemes.

May 2, 2025 · We summarize the following recommendations for using parallel computing in sequence alignment. First, the algorithm should be highly parallelizable. Second, …

Apr 5, 2021 · Secondly, we briefly discuss and compare the main ideas of the three models and introduce applications adopting parallel computing under four common scenarios: genome …