Protein Data Bank - an overview | ScienceDirect Topics
The Protein Data Bank (PDB) is an open-access database that saves and distributes (3D) biomolecular structure information to assist in the exploration and design of therapeutic and …
RCSB Protein Data Bank: Architectural Advances Towards …
May 28, 2021 · These ETL operations include updates to reference sequence database correspondences plus reference database correspondences for small molecules in PDB …
RCSB Protein Data Bank: Efficient Searching and ... - ScienceDirect
Jul 15, 2023 · The Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (PDB) RCSB.org research-focused web portal 1, 2, 3 provides open access to a …
PepBind: A Comprehensive Database and Computational Tool for …
Aug 1, 2013 · This initial database release focuses on providing protein–peptide interface information along with structure and sequence information for protein–peptide complexes …
Molecular docking of γ-sitosterol with some targets related to …
Jan 1, 2012 · PDB SUM is a web based database providing largely a pictorial summary of the key information such as images of the structure and protein-ligand interaction using the LIGPLOT …
PCPD: Plant cytochrome P450 database and web-based
Jun 1, 2021 · Structure analysis of all P450 crystal structures from the PDB database also suggested a similar structural arrangement (Fig. S1). The conserved structural arrangement …
FebRNA: An automated fragment-ensemble-based model for …
Sep 20, 2022 · FebRNA involves a new structure building strategy through fragment assembly based on CG-level fragment ensembles: 1) establishing a library of non-redundant CG …
PrePPI: A Structure Informed Proteome-wide Database of …
Jul 15, 2023 · PrePPI’s structural modeling (SM) pipeline: Structures for query proteins, QA and QB, are taken from the AlphaFold Protein Structure Database 13 and parsed into domains …
DistAA: Database of amino acid distances in proteins and web ...
Dec 1, 2019 · The objective of this work was to construct the database with amino acid distances in proteins and to obtain an updated statistical analysis of geometric distances for pairwise …
PSAC-PDB: Analysis and classification of protein structures
May 1, 2023 · This paper presents a novel framework, called PSAC-PDB, for analyzing and classifying protein structures from the Protein Data Bank (PDB). PSAC-PDB first finds, …