Aug 29, 2019 · We propose a new algorithm named the grid- and modularity-based layout (GML) that is specifically focused on the modular properties of complex biological networks, where …

The fast grid layout algorithm applies for this purpose a method termed sweep calculation, which reduces time complexity and makes this algorithm faster than the cross cost grid layout …

Mar 6, 2007 · We proposed a grid layout algorithm that can handle gene-regulatory networks and signal transduction pathways by considering edge-edge crossing, node-edge crossing, …

Jan 27, 2005 · Results: We propose a novel layout algorithm to draw complex biochemical networks. A network is modeled as a system of interacting nodes on squared grids. A discrete …

In this paper, we present a classification scheme for layout procedures for GLML. The classification scheme is based on a classification scheme we developed for the concrete …

This algorithm uses a weight matrix representing the difference between two sequentially obtained layouts for computing the costs, takes a greedy algorithm for searching locally optimal …

In order to improve computation performance, this article proposes a new grid point matching based algorithm named grid-based layout (GBL) with three procedures to draw complex …

Aug 29, 2019 · We propose a new algorithm named the grid- and modularity-based layout (GML) that is specifically focused on the modular properties of complex biological networks, where …

Wrangling diagram elements to an exact position or layout is not what PlantUML is for. However, there are some layout tweak mechanisms that should be used sparingly . These are described …

The layout engine implements the MILP optimiser used by GRIDS. It is implemented in Python, and uses the Gurobi optimiser. To run the optimiser with an input JSON file (example file …